Table of Contents
Introduction to RGCC’s Tests
Array Comparative Hybridization (aCGH)
- Missing primary origin or Missing Knowledge?
- Identification of the origin of the primary tumor
- Based on DNA Analysis of CTCs/CSCs for detection of chromosomal abnormalities
- Non-invasive (Blood Sample)
- All types of cancer
- Needless interpretation
- Final results in 3-4 weeks
- Example
Chromosome/ Size | Start-Stop Position (bp) | Gene | Outcome |
---|---|---|---|
AMP 11q25/ 2.002 Kb | 131529509-133531350 | NTM (OMIM), OPCML (MORBID), NTM-AS1, NTM-IT | PATHOGENIC OPCML in ovarian Cancer |
AMP 15q11.1-q11.2/ 2.028 Kb | 20481702-22509254 | NBEAP1 (OMIM), CHEK2P2, HERC2P3, CXADRP2, OR4M2, OR4N4, | CNP BENIGN |
DEL 17q11.2/ 129 Kb | 28512892-28641737 | NSRP1 (OMIM), SLC6A4 (MORBID), BLMH (MORBID) | PATHOGENIC SLC6A4 involved in Anxiety-related personality trait and Obsessive-compulsive disorder |
Conclusion: According to the profile of CGH analysis the higher probability for the place of origin of the malignancy is the organ of ovaries.
Oncocount
Q: Are there any CTCs present?
A: Use Oncocount
- Purpose: Detection and measurement of CTCs in peripheral blood
- Diagnostic Tool - Presence of malignant cells or not
- Follow up tool – Monitor early relapse
- For both hematologic and solid tumors
- Very low Limit of Detection (can detect rare events)
- Requirements: 7-10 ml of whole (peripheral) blood in RGCC tube
Oncocount sample report
- Both solid tumors and hematologic
malignancies - Ideally negative results
- Ideally negative expression
Oncotrace
Q: Where do detected CTCs come from?
A: Use Oncotrace
- Purpose: CTC number and immunophenotype for specific types of malignancies.
- Diagnostic tool - Determine tissue of origin / Primary Tumor
- Follow up tool - Control the risk of relapse and monitor the patient’s status during and after treatment
- For both hematologic and solid tumors.
- Requirements: 7-10 ml of whole (peripheral) blood in RGCC tube
Markers used in Oncotrace Diagnosis
Hematologic origin (CD45+)
- B cell origin (CD19)
- Hodgkin lymphoma (CD30)
Solid tumors (CD45-)
- Lung neuroendocrine tumor (CD19)
- Sarcoma (CD34, CD99)
- Melanoma (CD63)
- Epithelial origin (EpCam, CK)
- Breast (MUC-1)
- Prostate (PSMA)
- Renal (VHL mut)
Markers for solid cancer prognosis:
- OKT 3/4 – resistance/recurrence
- SOX2 – resistance/recurrence
- C-met – risk of metastasis
- CD133 – risk of metastasis
- CD44 – risk of metastasis
- Nanog – risk of metastasis
Markers for hematologic cancer prognosis:
- CD34 - tumor initiating cell
- CD19 - B cell origin
- CD30 - Hodgkin’s lymphoma
Oncotrace sample report
- Phenotype ALWAYS prevails over numbers
Oncotrail
- Once tumor site is determined, then Oncotrail may be used
- Oncotrail provides information about CTC number and immunophenotype for specific types of malignancies
- Suitable tool for follow up
- Requirements: 10 ml of whole (peripheral) blood in RGCC tube
- Breast Oncotrail
- Colon Oncotrail
- GI Oncotrail
- Lung Oncotrail
- Melanoma Oncotrail
- Prostate Oncotrail
- Sarcoma Oncotrail
Oncotrail sample report
Onconomics
Q. Which is the most effective treatment?
A. Use Onconomics
Effect of specific anti-cancer drugs and targeted therapies on CTCs of individual patient
Both solid tumors and hematological malignancies
- Molecular techniques: epigenetic analysis
- Cellular techniques: viability assays
- Requirements: 15-25 ml of whole (peripheral) blood in RGCC tube
Onconomics sample report
- Alkylating agents
- Topoisomerases I & II
- Nucleoside analogues
- Nucleus spindle stabilizers
- Resistance factors
- Tumor related genes
- Small molecule weight molecules
Onconomics Extracts
Q. Which is the most effective natural substance?
A. Use Onconomics Extracts
Efficacy of natural biological substances or extracts on CTCs of individual patient.
- Direct anti-cancer effect: Apoptotic pathways
- Immune stimulation: Release of cytokines
- Inhibition of proliferative signals: Growth factor Receptors, signal transduction
Both solid tumors and hematological malignancies
Requirements: 15-25 ml of whole (peripheral) blood in RGCC tube
Onconomics Extracts sample report
Onconomics Plus
Q. Which is the most effective treatment AND natural substance?
A. Use Onconomics Plus
Onconomics + Onconomics Extracts
Identification of the most effective treatment option, for each patient specifically
Apart from cytotoxic drugs, incorporates also Natural Substances
Requirements: 15-25 ml of whole (peripheral) blood in RGCC tube
Onconomics Plus sample report
ChemoSNiP
The reason people vary in their responses to drug treatments lies in the genetic differences, or variation, between them.
- Used to study How patient’s genome affects response to drugs
- Based on Molecular Biology techniques
- Blood or Swab sample
- Response level of basic metabolism enzymes (CYP2D6, GSTP1, NAT2, etc.)
- Wide range of chemotherapeutic drugs (alkylating agents, antimetabolites, topoisomerase inhibitors, spindle poisons etc.)
Metastat
Living with the unknown
“I feel like if I knew my exact chances of the cancer coming back, I could deal with it. But when I ask my doctor, he gives me a range of statistics over a number of years. I can’t live like this. I need more specifics.”
- Whether a secondary cancerous tumour is likely to develop and its potential location
- CTCs have potential to spread
- Markers vary according to the new metastatic site
- Markers for
- General metastasis
- Lung metastasis
- Brain metastasis
- Liver metastasis
- Bones metastasis
Immune-frame
Q. How can we assess immune function?
A. Use immune-frame
- Development of cachexia
- Presence and stimulation of DCs
- Specific Humoral or Cellular Immunity
- Non-specific cellular immunity
- Immunosuppressive mechanism
- Requirements: 15-25 ml of whole (peripheral) blood in RGCC tube
Immune-frame sample report
RGCC CAMBISeq
-
Beneficial Mutations for cancer treatment?
- Response to targeted therapy / immunotherapy
- Cancer Analysis, Mutational, Burden and Instability, Sequencing
- Next Generation Sequencing (NGS)
- Analysis of both DNA and RNA
- Any type of cancer
- High coverage
R.G.C.C. | Supplier A-Test A | Supplier A- Test B | Supplier B-Test A | |
---|---|---|---|---|
Sample type | Whole Blood Tissue | FFPE | FFPE, Peripheral Whole Blood | FFPE/Genomic DNA/ Slides (Tumor sample) |
Type of Cancer | Pan-cancer | Solid tumor | Hematologic, Malignancies, Sarcomas | Mainly Solid |
Genes Tested DNA | > 500 | > 320 | > 400 | > 500 |
Genes Tested RNA | √ | - | √ | √ |
Translocations | √ | √ | √ | √ |
TMB | √ | √ | √ | √ |
MSI | √ | √ | √ | √ |
Coverage | ≈ 1000-2500X | > 500X | > 500X | > 750X |
Price | €€ | €€€€ | €€€€€ | €€€€ |
CefSeq
- Fishing mutations from fragments
- Prediction of response to targeted therapy, based on study of circulating- free DNA / circulating-tumor DNA (ctDNA)
- Next Generation Sequencing
- High coverage
Conclusion
RGCC focuses on study of CTCs/CSCs and through our tests we can provide useful information about
- Detection or the Primary Origin of Tumor,
- Treatment efficacy
- Disease Prognosis
- Metabolism of drugs
Different therapies are provided, depending on each condition